Nextstrain – Zika

Nextstrain bioinformatics visualisation tool on Ubuntu server.

Nextstrain CLIhttps://github.com/nextstrain/cli

Zika tutorialNextstrain Zika / Zika Tutorial / Getting started

Server installation

Start and SSH to the Ubuntu Server

Add universe repository

Update system

Install Docker

Docker without sudo

Check Python version

Install python3 PIP

Install nextstrain-cli

Reboot or logout/login

Check Nextstrain setup has been installed

Nextstrain Output

Nextstrain commands

Install Zika data tutorial

Clone zika setup

Change to zika directory

Build zika

On/If error copy example_data/zika.fasta to data folder

Build zika again

View in auspice (Front-end)

Auspice output

View datasets in the browser
http://192.168.122.156:4000/local/zika

Auspice start commands